Release notes >>

BioUML workbench 0.7.6 (beta)

installer for Windows OS (8.9 Mb)
installer for Linux/Unix OS (8.9 Mb)
installer for Max OS X (8.6 Mb)

Modules for BioUML workbench 0.7.6

Warning: some modules for old versions of BioUML workbench are not suitable for new version 0.7.6

SBML model repository (61 kb). 
See the module description for more details.

CellML models (764 kb).
This is subset of CellML models that includes description of chemical reactions.

GeneNet database module (1.2 mb)
This is version of GeneNet database when it was available for download (June 2004).

SBML models from semantic tests level 1 (46 kb).
SBML models from semantic tests level 2 (99 kb).
 ... 

BioUML development kit

BDK (11.7 mb).

BioUML Development Kit (BDK) allows to developer implement their own modules for BioUML as well as modify and improve BioUML workbench. We have tried to make BDK distributive compact as possible, thus documentation and source code for third party libraries are not included in the distributive. Developers can download them from corresponding web sites, listed below.

BioUML development kit includes:

• BioUML workbench sources (biouml package)
  They are available under GNU LGPL license.
  (c) Copyright Bio soft. Ru 2002-2005. All rights reserved.
   
• Java libraries from Biosoft.Ru.
  These libraries (ru. biosoft package) are essential part of BioUML Development Kit.
  They are available under GNU LGPL license.
  (c) Copyright Biosoft. Ru 2002-2005. All rights reserved.
   
• Java libraries from (package com.developmentontheedge)
  These library are used for BioUML framework UI.
  Copyright © 2001-2005 Development On The Edge. All Rights Reserved.
   
• BeanExplorer(TM)
  New methodology for rapid development of application user interface.
  Copyright © 2001-2005 Development On The Edge. All Rights Reserved.
  BeanExplorer
   
• Eclipse platform runtime
  (c) Copyright IBM Corp. and others 2000-2004. All rights reserved.
  http://www.eclipse.org
   
• Java libraries from Jakarta project (LOG4J, CLI)
  Copyright © 1999-2005 The Apache Software Foundation. All Rights Reserved.
  http://www.apache.org
   
• Systems Biology Workbench
  Copyright 2001-2003 California Institute of Technology and Japan Science and Technology Corporation.
  http://www.sbw-sbml.org
   
• Rhino: JavaScript for Java
  Copyright © 1998-2003 The Mozila Organization.
  http://www.mozilla.org
   
• MySQL AB's JDBC Driver for MySQL
  Copyright (c) 2002/2003 MySQL AB
  http://www.mysql.com
   
• JGraph, JGraph-Addons
  Copyright (c) 2000-2004 Copyright JGraph, Ltd. All Rights Reserved.
  http://www.jgraph.com
   
• SBML semantic test suite
  Slightly modified version of original SBML Semantic Test Suite - Beta Release developed by Andrew Finney.
   
• JUnit
  http://www.junit.org 
   
• build.xml - makefile for Ant to compile and run BioUML workbench or it parts.

Other modules can include additional software developed by third parties.

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